U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SGCA sarcoglycan alpha [ Strigops habroptila (Kakapo) ]

Gene ID: 115617803, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
SGCA
Gene description
sarcoglycan alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SGCA in Genome Data Viewer
Location:
chromosome: 19
Exon count:
9
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 19 NC_044295.2 (5695551..5699485, complement)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 18 NC_044294.1 (5695551..5699485, complement)

Chromosome 19 - NC_044295.2Genomic Context describing neighboring genes Neighboring gene all-trans-retinol 13,14-reductase-like Neighboring gene uncharacterized LOC115617801 Neighboring gene collagen type I alpha 1 chain Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene olfactory receptor 14A16-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_044295.2 Reference bStrHab1.2.pri

    Range
    5695551..5699485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030508751.1 → XP_030364611.1  alpha-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A672USD3
    Conserved Domains (1) summary
    pfam05510
    Location:6 → 354
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_030508750.1 → XP_030364610.1  alpha-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A672USD3
    Conserved Domains (1) summary
    pfam05510
    Location:6 → 363
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  3. XM_030508749.1 → XP_030364609.1  alpha-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A672USD3
    Conserved Domains (1) summary
    pfam05510
    Location:6 → 364
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.