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LOC115617122 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like [ Strigops habroptila (Kakapo) ]

Gene ID: 115617122, updated on 3-Aug-2024

Summary

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Gene symbol
LOC115617122
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
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Genomic context

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See LOC115617122 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
5
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 15 NC_044291.2 (93010..99795, complement)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 16 NC_044292.1 (93010..99795, complement)

Chromosome 15 - NC_044291.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115617125 Neighboring gene general transcription factor IIIC subunit 5 Neighboring gene ral guanine nucleotide dissociation stimulator Neighboring gene uncharacterized LOC115617126 Neighboring gene coiled-coil domain containing 180 Neighboring gene surfeit 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables globoside alpha-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_044291.2 Reference bStrHab1.2.pri

    Range
    93010..99795 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030507291.1 → XP_030363151.1  LOW QUALITY PROTEIN: globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

    Conserved Domains (1) summary
    cl11394
    Location:15 → 303
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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