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SMPDL3B sphingomyelin phosphodiesterase acid like 3B [ Strigops habroptila (Kakapo) ]

Gene ID: 115616032, updated on 3-Aug-2024

Summary

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Gene symbol
SMPDL3B
Gene description
sphingomyelin phosphodiesterase acid like 3B
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See SMPDL3B in Genome Data Viewer
Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 12 NC_044288.2 (4315626..4321272, complement)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 13 NC_044289.1 (4315626..4321272, complement)

Chromosome 12 - NC_044288.2Genomic Context describing neighboring genes Neighboring gene platelet activating factor receptor Neighboring gene EYA transcriptional coactivator and phosphatase 3 Neighboring gene XK related 8 Neighboring gene replication protein A2 Neighboring gene thymocyte selection associated family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acid sphingomyelinase-like phosphodiesterase 3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_044288.2 Reference bStrHab1.2.pri

    Range
    4315626..4321272 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030504840.1 → XP_030360700.1  acid sphingomyelinase-like phosphodiesterase 3b

    UniProtKB/TrEMBL
    A0A672UXB9
    Conserved Domains (1) summary
    cd00842
    Location:20 → 320
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
Nucleotide Protein
Heading Accession and Version

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