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LOC115614361 contactin-6-like [ Strigops habroptila (Kakapo) ]

Gene ID: 115614361, updated on 3-Aug-2024

Summary

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Gene symbol
LOC115614361
Gene description
contactin-6-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
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Genomic context

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See LOC115614361 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
20
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 11 NC_046360.1 (28690821..28787368, complement)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 11 NC_044287.1 (28690821..28787368, complement)

Chromosome 11 - NC_046360.1Genomic Context describing neighboring genes Neighboring gene interleukin 5 receptor subunit alpha Neighboring gene contactin 4 Neighboring gene cell adhesion molecule L1 like Neighboring gene contactin-3-like Neighboring gene uncharacterized LOC115614563

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: contactin-6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_046360.1 Reference bStrHab1.2.pri

    Range
    28690821..28787368 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030501153.1 → XP_030357013.1  LOW QUALITY PROTEIN: contactin-6-like

    UniProtKB/TrEMBL
    A0A672VDG6
    Conserved Domains (3) summary
    smart00060
    Location:831 → 911
    FN3; Fibronectin type 3 domain
    cd00063
    Location:526 → 620
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:247 → 331
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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