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ACAN aggrecan [ Strigops habroptila (Kakapo) ]

Gene ID: 115613125, updated on 3-Aug-2024

Summary

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Gene symbol
ACAN
Gene description
aggrecan
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See ACAN in Genome Data Viewer
Location:
chromosome: 9
Exon count:
19
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 9 NC_044285.2 (8215285..8264722)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 9 NC_044285.1 (8215285..8264722)

Chromosome 9 - NC_044285.2Genomic Context describing neighboring genes Neighboring gene DET1 partner of COP1 E3 ubiquitin ligase Neighboring gene apoptosis enhancing nuclease Neighboring gene hyaluronan and proteoglycan link protein 3 Neighboring gene milk fat globule EGF and factor V/VIII domain containing Neighboring gene abhydrolase domain containing 2, acylglycerol lipase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aggrecan core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_044285.2 Reference bStrHab1.2.pri

    Range
    8215285..8264722
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030498228.1 → XP_030354088.1  aggrecan core protein isoform X1

    UniProtKB/TrEMBL
    A0A672UFG0
    Conserved Domains (9) summary
    cd00033
    Location:2207 → 2263
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd03588
    Location:2080 → 2203
    CLECT_CSPGs; C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins
    PHA03307
    Location:960 → 1183
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00054
    Location:2038 → 2074
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd03517
    Location:149 → 243
    Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
    cd03520
    Location:250 → 345
    Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
    TIGR02813
    Location:1335 → 1938
    omega_3_PfaA; polyketide-type polyunsaturated fatty acid synthase PfaA
    TIGR03835
    Location:1659 → 2034
    termin_org_DnaJ; terminal organelle assembly protein TopJ
    cl11960
    Location:43 → 150
    Ig; Immunoglobulin domain

  2. XM_030498229.1 → XP_030354089.1  aggrecan core protein isoform X2

    UniProtKB/TrEMBL
    A0A672UFH3
    Conserved Domains (8) summary
    cd00033
    Location:2169 → 2225
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd03588
    Location:2042 → 2165
    CLECT_CSPGs; C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins
    PHA03307
    Location:960 → 1183
    PHA03307; transcriptional regulator ICP4; Provisional
    cd03517
    Location:149 → 243
    Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
    cd03520
    Location:250 → 345
    Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
    TIGR02813
    Location:1335 → 1938
    omega_3_PfaA; polyketide-type polyunsaturated fatty acid synthase PfaA
    TIGR03835
    Location:1659 → 2041
    termin_org_DnaJ; terminal organelle assembly protein TopJ
    cl11960
    Location:43 → 150
    Ig; Immunoglobulin domain
Nucleotide Protein
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