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CSPG4 chondroitin sulfate proteoglycan 4 [ Strigops habroptila (Kakapo) ]

Gene ID: 115613052, updated on 3-Aug-2024

Summary

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Gene symbol
CSPG4
Gene description
chondroitin sulfate proteoglycan 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See CSPG4 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 9 NC_044285.2 (19724767..19756449)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 9 NC_044285.1 (19724767..19756449)

Chromosome 9 - NC_044285.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115613273 Neighboring gene leucine rich repeat and Ig domain containing 1 Neighboring gene sorting nexin 33 Neighboring gene snurportin 1 Neighboring gene protein tyrosine phosphatase non-receptor type 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
LOW QUALITY PROTEIN: chondroitin sulfate proteoglycan 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_044285.2 Reference bStrHab1.2.pri

    Range
    19724767..19756449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030498075.1 → XP_030353935.1  LOW QUALITY PROTEIN: chondroitin sulfate proteoglycan 4

    UniProtKB/TrEMBL
    A0A672V275
    Conserved Domains (2) summary
    cd00110
    Location:81 → 230
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam16184
    Location:1522 → 1629
    Cadherin_3; Cadherin-like
Nucleotide Protein
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