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XYLB xylulokinase [ Strigops habroptila (Kakapo) ]

Gene ID: 115612854, updated on 3-Aug-2024

Summary

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Gene symbol
XYLB
Gene description
xylulokinase
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See XYLB in Genome Data Viewer
Location:
chromosome: 1
Exon count:
20
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 1 NC_044277.2 (103614077..103698633, complement)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 1 NC_044277.1 (120085272..120169828, complement)

Chromosome 1 - NC_044277.2Genomic Context describing neighboring genes Neighboring gene activin A receptor type 2B Neighboring gene uncharacterized LOC115610393 Neighboring gene uncharacterized LOC115612865 Neighboring gene chromosome 1 C9orf152 homolog Neighboring gene negative regulator of ubiquitin like proteins 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-xylulokinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-xylose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xylulose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylulose kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_044277.2 Reference bStrHab1.2.pri

    Range
    103614077..103698633 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030497673.1 → XP_030353533.1  xylulose kinase isoform X2

    Conserved Domains (1) summary
    cd07776
    Location:5 → 426
    FGGY_D-XK_euk; eukaryotic D-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases

  2. XM_030497662.1 → XP_030353522.1  xylulose kinase isoform X1

    UniProtKB/TrEMBL
    A0A672U9R3
    Conserved Domains (1) summary
    cd07776
    Location:5 → 475
    FGGY_D-XK_euk; eukaryotic D-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases

  3. XM_032920160.1 → XP_032776051.1  xylulose kinase isoform X4

    Conserved Domains (1) summary
    cd07776
    Location:2 → 371
    FGGY_D-XK_euk; eukaryotic D-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases

  4. XM_030497684.1 → XP_030353544.1  xylulose kinase isoform X3

    Conserved Domains (2) summary
    cd07776
    Location:1 → 406
    FGGY_D-XK_euk; eukaryotic D-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases
    TIGR01311
    Location:367 → 454
    glycerol_kin; glycerol kinase

RNA

  1. XR_003993182.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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