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SELE selectin E [ Strigops habroptila (Kakapo) ]

Gene ID: 115612000, updated on 3-Aug-2024

Summary

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Gene symbol
SELE
Gene description
selectin E
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See SELE in Genome Data Viewer
Location:
chromosome: 8
Exon count:
14
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 8 NC_044284.2 (42698439..42707217, complement)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 8 NC_044284.1 (42698439..42707217, complement)

Chromosome 8 - NC_044284.2Genomic Context describing neighboring genes Neighboring gene LIM homeobox transcription factor 1 alpha Neighboring gene retinoid X receptor gamma Neighboring gene uncharacterized LOC115612002 Neighboring gene 14 kDa phosphohistidine phosphatase Neighboring gene methyltransferase 18, RPL3 N3(tau)-histidine Neighboring gene FIGNL1 interacting regulator of recombination and mitosis

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oligosaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sialic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leukocyte tethering or rolling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to cytokine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E-selectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_044284.2 Reference bStrHab1.2.pri

    Range
    42698439..42707217 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030495768.1 → XP_030351628.1  E-selectin isoform X3

    UniProtKB/TrEMBL
    A0A672U860
    Conserved Domains (3) summary
    cd03592
    Location:23 → 141
    CLECT_selectins_like; C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels)
    PHA02927
    Location:389 → 548
    PHA02927; secreted complement-binding protein; Provisional
    cd00054
    Location:146 → 176
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

  2. XM_030495767.1 → XP_030351627.1  E-selectin isoform X2

    UniProtKB/TrEMBL
    A0A672U860
    Conserved Domains (3) summary
    cd03592
    Location:23 → 141
    CLECT_selectins_like; C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels)
    PHA02927
    Location:389 → 548
    PHA02927; secreted complement-binding protein; Provisional
    cd00054
    Location:146 → 176
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

  3. XM_030495766.1 → XP_030351626.1  E-selectin isoform X1

    UniProtKB/TrEMBL
    A0A672U860
    Conserved Domains (3) summary
    cd03592
    Location:23 → 141
    CLECT_selectins_like; C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels)
    PHA02927
    Location:389 → 548
    PHA02927; secreted complement-binding protein; Provisional
    cd00054
    Location:146 → 176
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

  4. XM_030495769.1 → XP_030351629.1  E-selectin isoform X4

    UniProtKB/TrEMBL
    A0A672U860
    Conserved Domains (3) summary
    cd03592
    Location:23 → 141
    CLECT_selectins_like; C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels)
    PHA02927
    Location:200 → 424
    PHA02927; secreted complement-binding protein; Provisional
    cd00054
    Location:146 → 176
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

  5. XM_030495770.1 → XP_030351630.1  E-selectin isoform X5

    Conserved Domains (2) summary
    PHA02927
    Location:256 → 415
    PHA02927; secreted complement-binding protein; Provisional
    cd00054
    Location:13 → 43
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

RNA

  1. XR_003992843.1 RNA Sequence

  2. XR_003992844.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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