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LOC115610981 toll-like receptor 2 type-2 [ Strigops habroptila (Kakapo) ]

Gene ID: 115610981, updated on 3-Aug-2024

Summary

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Gene symbol
LOC115610981
Gene description
toll-like receptor 2 type-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
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Genomic context

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See LOC115610981 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 7 NC_044283.2 (45535189..45543199, complement)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 7 NC_044283.1 (45319698..45327708, complement)

Chromosome 7 - NC_044283.2Genomic Context describing neighboring genes Neighboring gene ring finger protein 175 Neighboring gene toll like receptor 2 Neighboring gene transmembrane 131 like Neighboring gene meiotic nuclear divisions 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacyl lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 2 type-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_044283.2 Reference bStrHab1.2.pri

    Range
    45535189..45543199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030493206.1 → XP_030349066.1  toll-like receptor 2 type-2 isoform X2

    UniProtKB/TrEMBL
    A0A672U9A4, A0A672UBW5
    Conserved Domains (5) summary
    smart00255
    Location:648 → 786
    TIR; Toll - interleukin 1 - resistance
    COG4886
    Location:368 → 519
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:44 → 64
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:88 → 145
    LRR_8; Leucine rich repeat
    cl15307
    Location:541 → 594
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  2. XM_030493205.1 → XP_030349065.1  toll-like receptor 2 type-2 isoform X2

    UniProtKB/TrEMBL
    A0A672U9A4, A0A672UBW5
    Conserved Domains (5) summary
    smart00255
    Location:648 → 786
    TIR; Toll - interleukin 1 - resistance
    COG4886
    Location:368 → 519
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:44 → 64
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:88 → 145
    LRR_8; Leucine rich repeat
    cl15307
    Location:541 → 594
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  3. XM_030493204.1 → XP_030349064.1  toll-like receptor 2 type-2 isoform X1

    UniProtKB/TrEMBL
    A0A672U9A4
    Conserved Domains (5) summary
    smart00255
    Location:701 → 839
    TIR; Toll - interleukin 1 - resistance
    COG4886
    Location:421 → 572
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:97 → 117
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:141 → 198
    LRR_8; Leucine rich repeat
    cl15307
    Location:594 → 647
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein
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