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PSAP prosaposin [ Strigops habroptila (Kakapo) ]

Gene ID: 115608990, updated on 3-Aug-2024

Summary

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Gene symbol
PSAP
Gene description
prosaposin
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See PSAP in Genome Data Viewer
Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 5 NC_044281.2 (37393757..37419163)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 5 NC_044281.1 (37393808..37419163)

Chromosome 5 - NC_044281.2Genomic Context describing neighboring genes Neighboring gene AIF family member 2 Neighboring gene carbohydrate sulfotransferase 3 Neighboring gene prosaposin-like Neighboring gene cadherin related 23 Neighboring gene V-set immunoregulatory receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in sphingolipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prosaposin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_044281.2 Reference bStrHab1.2.pri

    Range
    37393757..37419163
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030488592.2 → XP_030344452.2  prosaposin isoform X1

    Conserved Domains (3) summary
    smart00162
    Location:50 → 83
    SAPA; Saposin/surfactant protein-B A-type DOMAIN
    smart00741
    Location:430 → 504
    SapB; Saposin (B) Domains
    pfam02199
    Location:515 → 546
    SapA; Saposin A-type domain

  2. XM_030488594.2 → XP_030344454.2  prosaposin isoform X3

    UniProtKB/TrEMBL
    A0A672UDT6
    Conserved Domains (3) summary
    smart00162
    Location:50 → 83
    SAPA; Saposin/surfactant protein-B A-type DOMAIN
    smart00741
    Location:427 → 501
    SapB; Saposin (B) Domains
    pfam02199
    Location:512 → 543
    SapA; Saposin A-type domain

  3. XM_030488593.2 → XP_030344453.2  prosaposin isoform X2

    Conserved Domains (3) summary
    smart00162
    Location:50 → 83
    SAPA; Saposin/surfactant protein-B A-type DOMAIN
    smart00741
    Location:429 → 503
    SapB; Saposin (B) Domains
    pfam02199
    Location:514 → 545
    SapA; Saposin A-type domain
Nucleotide Protein
Heading Accession and Version

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