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CHPF chondroitin polymerizing factor [ Strigops habroptila (Kakapo) ]

Gene ID: 115608298, updated on 3-Aug-2024

Summary

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Gene symbol
CHPF
Gene description
chondroitin polymerizing factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See CHPF in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 5 NC_044281.2 (59835408..59840479, complement)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 5 NC_044281.1 (59741971..59747042, complement)

Chromosome 5 - NC_044281.2Genomic Context describing neighboring genes Neighboring gene rac GTPase-activating protein 1-like Neighboring gene acid sensing ion channel subunit family member 4 Neighboring gene transmembrane protein 198 Neighboring gene obscurin like cytoskeletal adaptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_044281.2 Reference bStrHab1.2.pri

    Range
    59835408..59840479 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030486958.1 → XP_030342818.1  chondroitin sulfate synthase 2

    UniProtKB/TrEMBL
    A0A672UJ92
    Conserved Domains (2) summary
    pfam05679
    Location:260 → 760
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:193 → 279
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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