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SGPP1 sphingosine-1-phosphate phosphatase 1 [ Strigops habroptila (Kakapo) ]

Gene ID: 115607232, updated on 3-Aug-2024

Summary

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Gene symbol
SGPP1
Gene description
sphingosine-1-phosphate phosphatase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See SGPP1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 4 NC_046358.1 (18815336..18835985, complement)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 4 NC_044280.1 (18815336..18835985, complement)

Chromosome 4 - NC_046358.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 2 regulatory subunit B'epsilon Neighboring gene WD repeat domain 89 Neighboring gene spectrin repeat containing nuclear envelope protein 2 Neighboring gene estrogen receptor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingosine-1-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine-1-phosphate phosphatase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_046358.1 Reference bStrHab1.2.pri

    Range
    18815336..18835985 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030484288.1 → XP_030340148.1  sphingosine-1-phosphate phosphatase 1

    UniProtKB/TrEMBL
    A0A672UB35
    Conserved Domains (1) summary
    cd03388
    Location:104 → 253
    PAP2_SPPase1; PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second ...
Nucleotide Protein
Heading Accession and Version

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