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PLCB2 phospholipase C beta 2 [ Strigops habroptila (Kakapo) ]

Gene ID: 115606933, updated on 3-Aug-2024

Summary

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Gene symbol
PLCB2
Gene description
phospholipase C beta 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See PLCB2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
33
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 4 NC_046358.1 (901740..945840)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 4 NC_044280.1 (901740..945840)

Chromosome 4 - NC_046358.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 9B Neighboring gene InaF motif containing 2 Neighboring gene p21 (RAC1) activated kinase 6 Neighboring gene BUB1 mitotic checkpoint serine/threonine kinase B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol phospholipase C activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_046358.1 Reference bStrHab1.2.pri

    Range
    901740..945840
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030483573.2 → XP_030339433.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2 isoform X1

    UniProtKB/TrEMBL
    A0A672TP33, A0A672TPI4
    Conserved Domains (5) summary
    cd00275
    Location:681 → 800
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08624
    Location:311 → 647
    PI-PLCc_beta2; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2
    cd16209
    Location:149 → 299
    EFh_PI-PLCbeta2; EF-hand motif found in phosphoinositide phospholipase C beta 2 (PI-PLC-beta2)
    pfam08703
    Location:979 → 1154
    PLC-beta_C; PLC-beta C terminal
    pfam17787
    Location:12 → 141
    PH_14; PH domain

  2. XM_030483574.1 → XP_030339434.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2 isoform X2

    UniProtKB/TrEMBL
    A0A672TNF4
    Conserved Domains (5) summary
    cd00275
    Location:681 → 800
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08624
    Location:311 → 647
    PI-PLCc_beta2; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2
    cd16209
    Location:149 → 299
    EFh_PI-PLCbeta2; EF-hand motif found in phosphoinositide phospholipase C beta 2 (PI-PLC-beta2)
    pfam08703
    Location:979 → 1039
    PLC-beta_C; PLC-beta C terminal
    pfam17787
    Location:12 → 141
    PH_14; PH domain

  3. XM_030483575.1 → XP_030339435.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2 isoform X2

    UniProtKB/TrEMBL
    A0A672TNF4
    Conserved Domains (5) summary
    cd00275
    Location:681 → 800
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08624
    Location:311 → 647
    PI-PLCc_beta2; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2
    cd16209
    Location:149 → 299
    EFh_PI-PLCbeta2; EF-hand motif found in phosphoinositide phospholipase C beta 2 (PI-PLC-beta2)
    pfam08703
    Location:979 → 1039
    PLC-beta_C; PLC-beta C terminal
    pfam17787
    Location:12 → 141
    PH_14; PH domain

  4. XM_030483576.1 → XP_030339436.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2 isoform X3

    UniProtKB/TrEMBL
    A0A672TP33
    Conserved Domains (4) summary
    cd00275
    Location:681 → 800
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08624
    Location:311 → 647
    PI-PLCc_beta2; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2
    cd16209
    Location:149 → 299
    EFh_PI-PLCbeta2; EF-hand motif found in phosphoinositide phospholipase C beta 2 (PI-PLC-beta2)
    pfam17787
    Location:12 → 141
    PH_14; PH domain

RNA

  1. XR_003991053.1 RNA Sequence

  2. XR_003991052.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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