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TMTC2 transmembrane O-mannosyltransferase targeting cadherins 2 [ Strigops habroptila (Kakapo) ]

Gene ID: 115605385, updated on 3-Aug-2024

Summary

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Gene symbol
TMTC2
Gene description
transmembrane O-mannosyltransferase targeting cadherins 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See TMTC2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 3 NC_044279.2 (43364231..43643472)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 3 NC_044279.1 (42432616..42711857)

Chromosome 3 - NC_044279.2Genomic Context describing neighboring genes Neighboring gene PTPRF interacting protein alpha 2 Neighboring gene methyltransferase like 25 Neighboring gene coiled-coil domain containing 59 Neighboring gene uncharacterized LOC115605133 Neighboring gene U6 spliceosomal RNA Neighboring gene solute carrier family 6 member 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_044279.2 Reference bStrHab1.2.pri

    Range
    43364231..43643472
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030479700.1 → XP_030335560.1  protein O-mannosyl-transferase TMTC2 isoform X3

    UniProtKB/TrEMBL
    A0A672TVK7
    Conserved Domains (5) summary
    COG0457
    Location:511 → 810
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:492 → 520
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:492 → 519
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:246 → 320
    DUF1736; Domain of unknown function (DUF1736)
    cl21590
    Location:77 → 199
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

  2. XM_030479698.1 → XP_030335558.1  protein O-mannosyl-transferase TMTC2 isoform X1

    Conserved Domains (3) summary
    COG0457
    Location:480 → 721
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:492 → 520
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:246 → 320
    DUF1736; Domain of unknown function (DUF1736)

  3. XM_030479699.1 → XP_030335559.1  protein O-mannosyl-transferase TMTC2 isoform X2

    Conserved Domains (4) summary
    COG0457
    Location:480 → 721
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:492 → 520
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:246 → 320
    DUF1736; Domain of unknown function (DUF1736)
    cl21590
    Location:77 → 199
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
Nucleotide Protein
Heading Accession and Version

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