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TMTC4 transmembrane O-mannosyltransferase targeting cadherins 4 [ Strigops habroptila (Kakapo) ]

Gene ID: 115604107, updated on 3-Aug-2024

Summary

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Gene symbol
TMTC4
Gene description
transmembrane O-mannosyltransferase targeting cadherins 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See TMTC4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
18
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 2 NC_044278.2 (69163089..69216460)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 2 NC_044278.1 (50281768..50335139)

Chromosome 2 - NC_044278.2Genomic Context describing neighboring genes Neighboring gene sodium leak channel, non-selective Neighboring gene uncharacterized LOC115603866 Neighboring gene gamma-glutamylamine cyclotransferase Neighboring gene propionyl-CoA carboxylase subunit alpha Neighboring gene Zic family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_044278.2 Reference bStrHab1.2.pri

    Range
    69163089..69216460
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030476854.1 → XP_030332714.1  protein O-mannosyl-transferase TMTC4 isoform X1

    UniProtKB/TrEMBL
    A0A672U2Q9
    Conserved Domains (3) summary
    COG0457
    Location:479 → 715
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:480 → 508
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:290 → 364
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_030476856.1 → XP_030332716.1  protein O-mannosyl-transferase TMTC4 isoform X2

    Conserved Domains (3) summary
    COG0457
    Location:354 → 590
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:355 → 383
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:290 → 312
    DUF1736; Domain of unknown function (DUF1736)

  3. XM_030476853.1 → XP_030332713.1  protein O-mannosyl-transferase TMTC4 isoform X1

    UniProtKB/TrEMBL
    A0A672U2Q9
    Conserved Domains (3) summary
    COG0457
    Location:479 → 715
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:480 → 508
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:290 → 364
    DUF1736; Domain of unknown function (DUF1736)

  4. XM_030476857.1 → XP_030332717.1  protein O-mannosyl-transferase TMTC4 isoform X3

    Conserved Domains (3) summary
    TIGR02917
    Location:274 → 522
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:287 → 315
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:97 → 171
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
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