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UXS1 UDP-glucuronate decarboxylase 1 [ Strigops habroptila (Kakapo) ]

Gene ID: 115604016, updated on 3-Aug-2024

Summary

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Gene symbol
UXS1
Gene description
UDP-glucuronate decarboxylase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See UXS1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 2 NC_044278.2 (60532679..60592452, complement)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 2 NC_044278.1 (41651358..41711131, complement)

Chromosome 2 - NC_044278.2Genomic Context describing neighboring genes Neighboring gene NCK adaptor protein 2 Neighboring gene ECRG4 augurin precursor Neighboring gene opsin-3-like Neighboring gene ST6 beta-galactoside alpha-2,6-sialyltransferase 2 Neighboring gene solute carrier family 5 member 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD+ binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables UDP-glucuronate decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-xylose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucuronic acid decarboxylase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_044278.2 Reference bStrHab1.2.pri

    Range
    60532679..60592452 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030476658.1 → XP_030332518.1  UDP-glucuronic acid decarboxylase 1 isoform X2

    Conserved Domains (2) summary
    cd05230
    Location:73 → 340
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs
    pfam11803
    Location:7 → 72
    UXS1_N; UDP-glucuronate decarboxylase N-terminal

  2. XM_030476657.1 → XP_030332517.1  UDP-glucuronic acid decarboxylase 1 isoform X1

    UniProtKB/TrEMBL
    A0A672TKH9
    Conserved Domains (2) summary
    cd05230
    Location:90 → 393
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs
    pfam11803
    Location:7 → 79
    UXS1_N; UDP-glucuronate decarboxylase N-terminal
Nucleotide Protein
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