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GPC6 glypican 6 [ Strigops habroptila (Kakapo) ]

Gene ID: 115603903, updated on 3-Aug-2024

Summary

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Gene symbol
GPC6
Gene description
glypican 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See GPC6 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 2 NC_044278.2 (71991646..72729069, complement)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 2 NC_044278.1 (53110325..53847748, complement)

Chromosome 2 - NC_044278.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115603932 Neighboring gene U2 spliceosomal RNA Neighboring gene dopachrome tautomerase Neighboring gene uncharacterized LOC115603904 Neighboring gene uncharacterized LOC115603905 Neighboring gene uncharacterized LOC115603906 Neighboring gene uncharacterized LOC115603907 Neighboring gene glypican 5 Neighboring gene uncharacterized LOC115603963 Neighboring gene inositol 1,4,5-trisphosphate receptor-interacting protein-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glypican-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_044278.2 Reference bStrHab1.2.pri

    Range
    71991646..72729069 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030476383.1 → XP_030332243.1  glypican-6

    UniProtKB/TrEMBL
    A0A672UC48
    Conserved Domains (1) summary
    pfam01153
    Location:30 → 555
    Glypican
Nucleotide Protein
Heading Accession and Version

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