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CALR calreticulin [ Strigops habroptila (Kakapo) ]

Gene ID: 115603437, updated on 3-Aug-2024

Summary

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Gene symbol
CALR
Gene description
calreticulin
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See CALR in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) Unplaced Scaffold NW_022651110.1 (705129..713343)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) Unplaced Scaffold NW_022045634.1 (705129..713343)

NW_022651110.1Genomic Context describing neighboring genes Neighboring gene RAS protein activator like 3 Neighboring gene uncharacterized LOC115603436 Neighboring gene UV excision repair protein RAD23 homolog A-like Neighboring gene GADD45G interacting protein 1 Neighboring gene nuclear factor I X

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calreticulin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NW_022651110.1 Reference bStrHab1.2.pri

    Range
    705129..713343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030475320.1 → XP_030331180.1  calreticulin isoform X1

    Conserved Domains (2) summary
    pfam00262
    Location:360 → 669
    Calreticulin; Calreticulin family
    pfam03154
    Location:26 → 316
    Atrophin-1; Atrophin-1 family

  2. XM_030475321.1 → XP_030331181.1  calreticulin isoform X2

    UniProtKB/TrEMBL
    A0A672UZ39
    Conserved Domains (1) summary
    pfam00262
    Location:26 → 335
    Calreticulin; Calreticulin family
Nucleotide Protein
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