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COLGALT1 collagen beta(1-O)galactosyltransferase 1 [ Strigops habroptila (Kakapo) ]

Gene ID: 115603391, updated on 3-Aug-2024

Summary

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Gene symbol
COLGALT1
Gene description
collagen beta(1-O)galactosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See COLGALT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) Unplaced Scaffold NW_022651110.1 (281674..288542)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) Unplaced Scaffold NW_022045634.1 (281674..288542)

NW_022651110.1Genomic Context describing neighboring genes Neighboring gene nucleoredoxin like 1 Neighboring gene solute carrier family 27 member 1 Neighboring gene 6-phosphogluconolactonase Neighboring gene PRKCSH beta subunit of glucosidase II Neighboring gene aurora kinase C-like Neighboring gene SPC24 component of NDC80 kinetochore complex

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables procollagen galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NW_022651110.1 Reference bStrHab1.2.pri

    Range
    281674..288542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030475225.1 → XP_030331085.1  procollagen galactosyltransferase 1

    UniProtKB/TrEMBL
    A0A672UX17
    Conserved Domains (2) summary
    cd00761
    Location:54 → 183
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl01298
    Location:338 → 523
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
Nucleotide Protein
Heading Accession and Version

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