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MTMR4 myotubularin related protein 4 [ Strigops habroptila (Kakapo) ]

Gene ID: 115603117, updated on 3-Aug-2024

Summary

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Gene symbol
MTMR4
Gene description
myotubularin related protein 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See MTMR4 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
22
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 13 Unlocalized Scaffold NW_022651054.1 (273509..331849)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) Unplaced Scaffold NW_022045613.1 (273408..331849)

NW_022651054.1Genomic Context describing neighboring genes Neighboring gene caspase-1-like Neighboring gene abhydrolase domain containing 11 Neighboring gene uncharacterized LOC115603147 Neighboring gene heat shock transcription factor 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein phosphatase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myotubularin-related protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NW_022651054.1 Reference bStrHab1.2.pri

    Range
    273509..331849
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030474752.2 → XP_030330612.1  myotubularin-related protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A672UJI1
    Conserved Domains (4) summary
    PHA03307
    Location:732 → 962
    PHA03307; transcriptional regulator ICP4; Provisional
    cd13342
    Location:23 → 136
    PH-GRAM_MTMR4; Myotubularian (MTM) related 4 protein (MTMR4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    cd15733
    Location:1067 → 1126
    FYVE_MTMR4; FYVE domain found in myotubularin-related protein 4 (MTMR4) and similar proteins
    cd14587
    Location:174 → 481
    PTP-MTMR4; protein tyrosine phosphatase-like domain of myotubularin related phosphoinositide phosphatase 4

  2. XM_030474755.1 → XP_030330615.1  myotubularin-related protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A672UJI1
    Conserved Domains (4) summary
    PHA03307
    Location:732 → 962
    PHA03307; transcriptional regulator ICP4; Provisional
    cd13342
    Location:23 → 136
    PH-GRAM_MTMR4; Myotubularian (MTM) related 4 protein (MTMR4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    cd15733
    Location:1067 → 1126
    FYVE_MTMR4; FYVE domain found in myotubularin-related protein 4 (MTMR4) and similar proteins
    cd14587
    Location:174 → 481
    PTP-MTMR4; protein tyrosine phosphatase-like domain of myotubularin related phosphoinositide phosphatase 4

  3. XM_030474754.1 → XP_030330614.1  myotubularin-related protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A672UJI1
    Conserved Domains (4) summary
    PHA03307
    Location:732 → 962
    PHA03307; transcriptional regulator ICP4; Provisional
    cd13342
    Location:23 → 136
    PH-GRAM_MTMR4; Myotubularian (MTM) related 4 protein (MTMR4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    cd15733
    Location:1067 → 1126
    FYVE_MTMR4; FYVE domain found in myotubularin-related protein 4 (MTMR4) and similar proteins
    cd14587
    Location:174 → 481
    PTP-MTMR4; protein tyrosine phosphatase-like domain of myotubularin related phosphoinositide phosphatase 4

  4. XM_030474753.1 → XP_030330613.1  myotubularin-related protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A672UJI1
    Conserved Domains (4) summary
    PHA03307
    Location:732 → 962
    PHA03307; transcriptional regulator ICP4; Provisional
    cd13342
    Location:23 → 136
    PH-GRAM_MTMR4; Myotubularian (MTM) related 4 protein (MTMR4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    cd15733
    Location:1067 → 1126
    FYVE_MTMR4; FYVE domain found in myotubularin-related protein 4 (MTMR4) and similar proteins
    cd14587
    Location:174 → 481
    PTP-MTMR4; protein tyrosine phosphatase-like domain of myotubularin related phosphoinositide phosphatase 4

  5. XM_030474751.1 → XP_030330611.1  myotubularin-related protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A672UJI1
    Conserved Domains (4) summary
    PHA03307
    Location:748 → 978
    PHA03307; transcriptional regulator ICP4; Provisional
    cd13342
    Location:39 → 152
    PH-GRAM_MTMR4; Myotubularian (MTM) related 4 protein (MTMR4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    cd15733
    Location:1083 → 1142
    FYVE_MTMR4; FYVE domain found in myotubularin-related protein 4 (MTMR4) and similar proteins
    cd14587
    Location:190 → 497
    PTP-MTMR4; protein tyrosine phosphatase-like domain of myotubularin related phosphoinositide phosphatase 4
Nucleotide Protein
Heading Accession and Version

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