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L1CAM L1 cell adhesion molecule [ Strigops habroptila (Kakapo) ]

Gene ID: 115602851, updated on 3-Aug-2024

Summary

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Gene symbol
L1CAM
Gene description
L1 cell adhesion molecule
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See L1CAM in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) Unplaced Scaffold NW_022651059.1 (122789..143181, complement)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) Unplaced Scaffold NW_022045577.1 (122789..143181, complement)

NW_022651059.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L10 Neighboring gene small nucleolar RNA SNORA70 Neighboring gene PDZ domain containing 4 Neighboring gene signal sequence receptor subunit 4 Neighboring gene isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neural cell adhesion molecule L1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NW_022651059.1 Reference bStrHab1.2.pri

    Range
    122789..143181 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030474280.1 → XP_030330140.1  neural cell adhesion molecule L1 isoform X2

    UniProtKB/TrEMBL
    A0A672U1Q7
    Conserved Domains (7) summary
    cd05845
    Location:155 → 249
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    smart00409
    Location:545 → 630
    IG; Immunoglobulin
    cd00063
    Location:836 → 944
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:465 → 532
    Ig; Immunoglobulin domain
    pfam00041
    Location:950 → 1035
    fn3; Fibronectin type III domain
    pfam13882
    Location:1178 → 1259
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:281 → 351
    Ig; Immunoglobulin domain

  2. XM_030474279.1 → XP_030330139.1  neural cell adhesion molecule L1 isoform X1

    UniProtKB/TrEMBL
    A0A672U1Q7
    Conserved Domains (7) summary
    cd05845
    Location:155 → 249
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    smart00409
    Location:545 → 630
    IG; Immunoglobulin
    cd00063
    Location:836 → 944
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:465 → 532
    Ig; Immunoglobulin domain
    pfam00041
    Location:950 → 1035
    fn3; Fibronectin type III domain
    pfam13882
    Location:1178 → 1263
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:281 → 351
    Ig; Immunoglobulin domain

  3. XM_030474281.1 → XP_030330141.1  neural cell adhesion molecule L1 isoform X3

    UniProtKB/TrEMBL
    A0A672U1Q7, A0A672U252
    Conserved Domains (7) summary
    cd05845
    Location:132 → 226
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    smart00409
    Location:522 → 607
    IG; Immunoglobulin
    cd00063
    Location:813 → 921
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:442 → 509
    Ig; Immunoglobulin domain
    pfam00041
    Location:927 → 1012
    fn3; Fibronectin type III domain
    pfam13882
    Location:1155 → 1240
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:258 → 328
    Ig; Immunoglobulin domain

  4. XM_030474282.2 → XP_030330142.1  neural cell adhesion molecule L1 isoform X3

    UniProtKB/TrEMBL
    A0A672U1Q7, A0A672U252
    Conserved Domains (7) summary
    cd05845
    Location:132 → 226
    Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
    smart00409
    Location:522 → 607
    IG; Immunoglobulin
    cd00063
    Location:813 → 921
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:442 → 509
    Ig; Immunoglobulin domain
    pfam00041
    Location:927 → 1012
    fn3; Fibronectin type III domain
    pfam13882
    Location:1155 → 1240
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:258 → 328
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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