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HCFC1 host cell factor C1 [ Strigops habroptila (Kakapo) ]

Gene ID: 115602835, updated on 3-Aug-2024

Summary

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Gene symbol
HCFC1
Gene description
host cell factor C1
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See HCFC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) Unplaced Scaffold NW_022651059.1 (178226..215497)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) Unplaced Scaffold NW_022045577.1 (178226..215497)

NW_022651059.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 120 Neighboring gene methyl-CpG binding protein 2 Neighboring gene synaptophysin-like Neighboring gene emerin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NW_022651059.1 Reference bStrHab1.2.pri

    Range
    178226..215497
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030474263.1 → XP_030330123.1  LOW QUALITY PROTEIN: host cell factor 1

    Conserved Domains (6) summary
    PHA03255
    Location:717 → 857
    PHA03255; BDLF3; Provisional
    PLN02193
    Location:32 → 327
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1756 → 1785
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:205 → 258
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:731 → 1002
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13854
    Location:324 → 356
    Kelch_5; Kelch motif
Nucleotide Protein
Heading Accession and Version

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