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FDPS farnesyl diphosphate synthase [ Strigops habroptila (Kakapo) ]

Gene ID: 115602551, updated on 3-Aug-2024

Summary

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Gene symbol
FDPS
Gene description
farnesyl diphosphate synthase
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See FDPS in Genome Data Viewer
Location:
chromosome: 22
Exon count:
9
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 22 NC_044298.2 (639715..642265, complement)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 14 Unlocalized Scaffold NW_022045575.1 (639715..642265, complement)

Chromosome 22 - NC_044298.2Genomic Context describing neighboring genes Neighboring gene ASH1 like histone lysine methyltransferase Neighboring gene RUN and SH3 domain containing 1 Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 3 Neighboring gene dual specificity protein kinase CLK2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dimethylallyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables geranyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in farnesyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
farnesyl pyrophosphate synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_044298.2 Reference bStrHab1.2.pri

    Range
    639715..642265 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030473745.1 → XP_030329605.1  farnesyl pyrophosphate synthase

    UniProtKB/TrEMBL
    A0A672UWJ5
    Conserved Domains (1) summary
    pfam00348
    Location:41 → 307
    polyprenyl_synt; Polyprenyl synthetase
Nucleotide Protein
Heading Accession and Version

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