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FMOD fibromodulin [ Strigops habroptila (Kakapo) ]

Gene ID: 115602473, updated on 3-Aug-2024

Summary

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Gene symbol
FMOD
Gene description
fibromodulin
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See FMOD in Genome Data Viewer
Location:
chromosome: 18
Exon count:
2
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 18 NC_044294.2 (2491694..2495352)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 14 Unlocalized Scaffold NW_022045574.1 (2491694..2495352)

Chromosome 18 - NC_044294.2Genomic Context describing neighboring genes Neighboring gene opticin Neighboring gene proline and arginine rich end leucine rich repeat protein Neighboring gene BTG anti-proliferation factor 2 Neighboring gene acidic mammalian chitinase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
fibromodulin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_044294.2 Reference bStrHab1.2.pri

    Range
    2491694..2495352
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030473647.1 → XP_030329507.1  fibromodulin

    UniProtKB/TrEMBL
    A0A672ULA5
    Conserved Domains (4) summary
    PRK15370
    Location:160 → 354
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    smart00013
    Location:79 → 113
    LRRNT; Leucine rich repeat N-terminal domain
    sd00033
    Location:111 → 134
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:110 → 171
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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