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CNTN2 contactin 2 [ Strigops habroptila (Kakapo) ]

Gene ID: 115602307, updated on 3-Aug-2024

Summary

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Gene symbol
CNTN2
Gene description
contactin 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See CNTN2 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
23
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 18 NC_044294.2 (559936..588832)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 14 Unlocalized Scaffold NW_022045574.1 (559936..588832)

Chromosome 18 - NC_044294.2Genomic Context describing neighboring genes Neighboring gene leucine rich repeat neuronal 2 Neighboring gene neurofascin Neighboring gene RB binding protein 5, histone lysine methyltransferase complex subunit Neighboring gene transmembrane protein 81 Neighboring gene dual serine/threonine and tyrosine protein kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_044294.2 Reference bStrHab1.2.pri

    Range
    559936..588832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030473290.1 → XP_030329150.1  contactin-2

    UniProtKB/TrEMBL
    A0A672V5H3
    Conserved Domains (7) summary
    cd05727
    Location:126 → 223
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05728
    Location:323 → 407
    Ig4_Contactin-2-like; Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05850
    Location:31 → 124
    Ig1_Contactin-2; First immunoglobulin (Ig) domain of contactin-2
    cd00063
    Location:613 → 700
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd04969
    Location:428 → 500
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    pfam00041
    Location:810 → 895
    fn3; Fibronectin type III domain
    cl11960
    Location:519 → 598
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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