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SPTLC1 serine palmitoyltransferase long chain base subunit 1 [ Strigops habroptila (Kakapo) ]

Gene ID: 115600724, updated on 3-Aug-2024

Summary

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Gene symbol
SPTLC1
Gene description
serine palmitoyltransferase long chain base subunit 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
Orthologs
human mouse all
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Genomic context

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See SPTLC1 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
16
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) Z NC_044302.2 (54835796..54870624)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) Z NC_044302.1 (54835796..54870624)

Chromosome Z - NC_044302.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115619360 Neighboring gene CDC42 small effector 2 Neighboring gene uncharacterized LOC115619359 Neighboring gene receptor tyrosine kinase like orphan receptor 2 Neighboring gene nuclear factor, interleukin 3 regulated

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_044302.2 Reference bStrHab1.2.pri

    Range
    54835796..54870624
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030470014.1 → XP_030325874.1  serine palmitoyltransferase 1

    UniProtKB/TrEMBL
    A0A672V475
    Conserved Domains (1) summary
    cl18945
    Location:26 → 474
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

RNA

  1. XR_003989120.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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