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LOC115582233 betaine--homocysteine S-methyltransferase 1 [ Sparus aurata (gilthead seabream) ]

Gene ID: 115582233, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115582233
Gene description
betaine--homocysteine S-methyltransferase 1
See related
Ensembl:ENSSAUG00010005094
Gene type
protein coding
RefSeq status
MODEL
Organism
Sparus aurata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Sparus
Also known as
BHMT6
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Genomic context

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See LOC115582233 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
100 current fSpaAur1.1 (GCF_900880675.1) 5 NC_044191.1 (25950024..25954686)

Chromosome 5 - NC_044191.1Genomic Context describing neighboring genes Neighboring gene betaine--homocysteine S-methyltransferase 1-like Neighboring gene betaine--homocysteine S-methyltransferase 1-like Neighboring gene alpha-ketoglutarate dehydrogenase subunit 4 Neighboring gene pyridoxal (pyridoxine, vitamin B6) phosphatase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044191.1 Chromosome 5 Reference fSpaAur1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables betaine-homocysteine S-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in methionine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
betaine--homocysteine S-methyltransferase 1
Names
betaine homocysteine methyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sparus aurata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSpaAur1.1 Primary Assembly

Genomic

  1. NC_044191.1 Reference fSpaAur1.1 Primary Assembly

    Range
    25950024..25954686
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030418054.1 → XP_030273914.1  betaine--homocysteine S-methyltransferase 1

    UniProtKB/TrEMBL
    A0A0A6YZ07, A0A671U9Y8
    Related
    ENSSAUP00010010795.1, ENSSAUT00010011472.1
    Conserved Domains (1) summary
    pfam02574
    Location:18 → 307
    S-methyl_trans; Homocysteine S-methyltransferase
Nucleotide Protein
Heading Accession and Version

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