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atp5mf ATP synthase membrane subunit f [ Sparus aurata (gilthead seabream) ]

Gene ID: 115576206, updated on 18-Sep-2024

Summary

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Gene symbol
atp5mf
Gene description
ATP synthase membrane subunit f
See related
Ensembl:ENSSAUG00010015404
Gene type
protein coding
RefSeq status
MODEL
Organism
Sparus aurata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Sparus
Also known as
ATP5J2
Orthologs
human zebrafish all
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Genomic context

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See atp5mf in Genome Data Viewer
Location:
chromosome: 23
Exon count:
4
Annotation release Status Assembly Chr Location
100 current fSpaAur1.1 (GCF_900880675.1) 23 NC_044209.1 (9002925..9005211, complement)

Chromosome 23 - NC_044209.1Genomic Context describing neighboring genes Neighboring gene serine hydroxymethyltransferase 1 (soluble) Neighboring gene cleavage and polyadenylation specific factor 4 Neighboring gene uncharacterized LOC115575721 Neighboring gene solute carrier family 29 member 4a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044209.1 Chromosome 23 Reference fSpaAur1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the molecular signatures of oxidative phosphorylation to cope with the nutritionally changing metabolic capabilities of liver and muscle tissues in farmed fish. Bermejo-Nogales A, et al. PLoS One, 2015. PMID 25875231, Free PMC Article
  2. A transcriptomic approach to study the effect of long-term starvation and diet composition on the expression of mitochondrial oxidative phosphorylation genes in gilthead sea bream (Sparus aurata). Silva-Marrero JI, et al. BMC Genomics, 2017 Oct 11. PMID 29020939, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton-transporting ATP synthase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton motive force-driven mitochondrial ATP synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP synthase subunit f, mitochondrial
Names
ATP synthase subunit f
mitochondrial ATP synthase subunit f

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sparus aurata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSpaAur1.1 Primary Assembly

Genomic

  1. NC_044209.1 Reference fSpaAur1.1 Primary Assembly

    Range
    9002925..9005211 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030408704.1 → XP_030264564.1  ATP synthase subunit f, mitochondrial

    UniProtKB/TrEMBL
    A0A0F6MX12
    Related
    ENSSAUP00010036464.1, ENSSAUT00010038390.1
    Conserved Domains (1) summary
    pfam10206
    Location:10 → 84
    WRW; Mitochondrial F1F0-ATP synthase, subunit f
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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