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supt3h SPT3 homolog, SAGA and STAGA complex component [ Gadus morhua (Atlantic cod) ]

Gene ID: 115560256, updated on 17-Mar-2024

Summary

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Gene symbol
supt3h
Gene description
SPT3 homolog, SAGA and STAGA complex component
See related
Ensembl:ENSGMOG00000000394
Gene type
protein coding
RefSeq status
MODEL
Organism
Gadus morhua
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
Orthologs
human zebrafish all
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Genomic context

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See supt3h in Genome Data Viewer
Location:
chromosome: 15
Exon count:
13
Annotation release Status Assembly Chr Location
100 current gadMor3.0 (GCF_902167405.1) 15 NC_044062.1 (24962555..24982153)

Chromosome 15 - NC_044062.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115559524 Neighboring gene uncharacterized LOC115559525 Neighboring gene uncharacterized LOC115559509 Neighboring gene uncharacterized LOC115559508 Neighboring gene runt-related transcription factor 3-like Neighboring gene CDC5 cell division cycle 5-like (S. pombe) Neighboring gene N-ethylmaleimide-sensitive factor attachment protein, beta a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044062.1 Chromosome 15 Reference gadMor3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Atlantic cod reveals a unique immune system. Star B, et al. Nature, 2011 Aug 10. PMID 21832995, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation protein SPT3 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference gadMor3.0 Primary Assembly

Genomic

  1. NC_044062.1 Reference gadMor3.0 Primary Assembly

    Range
    24962555..24982153
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030379588.1 → XP_030235448.1  transcription initiation protein SPT3 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8C5CQ91
    Conserved Domains (1) summary
    cd07978
    Location:20 → 112
    TAF13; The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

  2. XM_030379589.1 → XP_030235449.1  transcription initiation protein SPT3 homolog isoform X4

    UniProtKB/TrEMBL
    A0A8C5CQ91, A0A8C5FN73
    Related
    ENSGMOP00000048956.1, ENSGMOT00000036793.1
    Conserved Domains (1) summary
    cd07978
    Location:20 → 112
    TAF13; The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

  3. XM_030379591.1 → XP_030235451.1  transcription initiation protein SPT3 homolog isoform X6

    UniProtKB/TrEMBL
    A0A8C5CQ91
    Conserved Domains (1) summary
    cd07978
    Location:20 → 112
    TAF13; The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

  4. XM_030379586.1 → XP_030235446.1  transcription initiation protein SPT3 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C5CQ91
    Conserved Domains (1) summary
    cd07978
    Location:20 → 112
    TAF13; The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

  5. XM_030379590.1 → XP_030235450.1  transcription initiation protein SPT3 homolog isoform X5

    UniProtKB/TrEMBL
    A0A8C5CQ91
    Conserved Domains (1) summary
    cd07978
    Location:20 → 112
    TAF13; The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

  6. XM_030379587.1 → XP_030235447.1  transcription initiation protein SPT3 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C4YTU0, A0A8C5CQ91
    Related
    ENSGMOP00000000390.2, ENSGMOT00000000412.2
    Conserved Domains (1) summary
    cd07978
    Location:20 → 112
    TAF13; The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
Nucleotide Protein
Heading Accession and Version

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