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dhx9 DEAH (Asp-Glu-Ala-His) box helicase 9 [ Gadus morhua (Atlantic cod) ]

Gene ID: 115548556, updated on 17-Mar-2024

Summary

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Gene symbol
dhx9
Gene description
DEAH (Asp-Glu-Ala-His) box helicase 9
See related
Ensembl:ENSGMOG00000027180
Gene type
protein coding
RefSeq status
MODEL
Organism
Gadus morhua
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
Orthologs
human zebrafish all
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Genomic context

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See dhx9 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
29
Annotation release Status Assembly Chr Location
100 current gadMor3.0 (GCF_902167405.1) 8 NC_044055.1 (16660538..16678058, complement)

Chromosome 8 - NC_044055.1Genomic Context describing neighboring genes Neighboring gene laminin, gamma 2 Neighboring gene laminin, gamma 1 Neighboring gene SHC binding and spindle associated 1 like Neighboring gene RAS protein activator like 2 Neighboring gene discs large MAGUK scaffold protein 1b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044055.1 Chromosome 8 Reference gadMor3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5' DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables 3'-5' DNA/RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase A
Names
DExH-box helicase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference gadMor3.0 Primary Assembly

Genomic

  1. NC_044055.1 Reference gadMor3.0 Primary Assembly

    Range
    16660538..16678058 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030363289.1 → XP_030219149.1  ATP-dependent RNA helicase A isoform X1

    UniProtKB/TrEMBL
    A0A8C5ABE9, A0A8C5C294
    Related
    ENSGMOP00000028394.1, ENSGMOT00000058223.1
    Conserved Domains (4) summary
    COG1643
    Location:413 → 1084
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd17972
    Location:363 → 596
    DEXHc_DHX9; DEXH-box helicase domain of DEAH-box helicase 9
    cd19854
    Location:3 → 71
    DSRM_DHX9_rpt1; first double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins
    cd19855
    Location:210 → 284
    DSRM_DHX9_rpt2; second double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins

  2. XM_030363290.1 → XP_030219150.1  ATP-dependent RNA helicase A isoform X2

    UniProtKB/TrEMBL
    A0A8C5AZZ7
    Related
    ENSGMOP00000037067.1, ENSGMOT00000044129.1
    Conserved Domains (3) summary
    COG1643
    Location:167 → 838
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd17972
    Location:117 → 350
    DEXHc_DHX9; DEXH-box helicase domain of DEAH-box helicase 9
    cd19855
    Location:1 → 38
    DSRM_DHX9_rpt2; second double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins
Nucleotide Protein
Heading Accession and Version

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