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pcnx1 pecanex 1 [ Gadus morhua (Atlantic cod) ]

Gene ID: 115543608, updated on 17-Mar-2024

Summary

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Gene symbol
pcnx1
Gene description
pecanex 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Gadus morhua
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
Orthologs
human zebrafish all
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Genomic context

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See pcnx1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
36
Annotation release Status Assembly Chr Location
100 current gadMor3.0 (GCF_902167405.1) 5 NC_044052.1 (19751532..19798524, complement)

Chromosome 5 - NC_044052.1Genomic Context describing neighboring genes Neighboring gene calcineurin-like EF-hand protein 1 Neighboring gene legumain Neighboring gene mediator complex subunit 6 Neighboring gene tetratricopeptide repeat domain 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044052.1 Chromosome 5 Reference gadMor3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Atlantic cod reveals a unique immune system. Star B, et al. Nature, 2011 Aug 10. PMID 21832995, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: pecanex-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference gadMor3.0 Primary Assembly

Genomic

  1. NC_044052.1 Reference gadMor3.0 Primary Assembly

    Range
    19751532..19798524 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030356025.1 → XP_030211885.1  LOW QUALITY PROTEIN: pecanex-like protein 1

    Conserved Domains (2) summary
    PHA03307
    Location:291 → 497
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05041
    Location:1861 → 2087
    Pecanex_C; Pecanex protein (C-terminus)
Nucleotide Protein
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