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chd1 chromodomain helicase DNA binding protein 1 [ Gadus morhua (Atlantic cod) ]

Gene ID: 115542952, updated on 17-Mar-2024

Summary

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Gene symbol
chd1
Gene description
chromodomain helicase DNA binding protein 1
See related
Ensembl:ENSGMOG00000001537
Gene type
protein coding
RefSeq status
MODEL
Organism
Gadus morhua
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
Orthologs
human zebrafish all
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Genomic context

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See chd1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
38
Annotation release Status Assembly Chr Location
100 current gadMor3.0 (GCF_902167405.1) 4 NC_044051.1 (10928790..10952323)

Chromosome 4 - NC_044051.1Genomic Context describing neighboring genes Neighboring gene macrophage immunometabolism regulator Neighboring gene ankyrin repeat domain 55 Neighboring gene receptor accessory protein 5 Neighboring gene spleen tyrosine kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044051.1 Chromosome 4 Reference gadMor3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference gadMor3.0 Primary Assembly

Genomic

  1. NC_044051.1 Reference gadMor3.0 Primary Assembly

    Range
    10928790..10952323
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030355466.1 → XP_030211326.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C5A5S0, A0A8C5CEN0
    Related
    ENSGMOP00000026529.1, ENSGMOT00000070011.1
    Conserved Domains (5) summary
    PLN03142
    Location:458 → 988
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18661
    Location:376 → 432
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:259 → 343
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    pfam13907
    Location:1483 → 1572
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:1110 → 1197
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1

  2. XM_030355469.1 → XP_030211329.1  chromodomain-helicase-DNA-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C5A5S0
    Conserved Domains (5) summary
    PLN03142
    Location:458 → 988
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18661
    Location:376 → 432
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:259 → 343
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    pfam13907
    Location:1482 → 1571
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:1110 → 1196
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1

  3. XM_030355470.1 → XP_030211330.1  chromodomain-helicase-DNA-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C5A5S0
    Conserved Domains (5) summary
    PLN03142
    Location:450 → 980
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18661
    Location:368 → 424
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:251 → 335
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    pfam13907
    Location:1475 → 1564
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:1102 → 1189
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1

  4. XM_030355468.1 → XP_030211328.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C5A5S0, A0A8C5CEN0
    Related
    ENSGMOP00000060463.1, ENSGMOT00000042024.1
    Conserved Domains (5) summary
    PLN03142
    Location:458 → 988
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18661
    Location:376 → 432
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:259 → 343
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    pfam13907
    Location:1483 → 1572
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:1110 → 1197
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1

  5. XM_030355467.1 → XP_030211327.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C5A5S0, A0A8C5CEN0
    Conserved Domains (5) summary
    PLN03142
    Location:458 → 988
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18661
    Location:376 → 432
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:259 → 343
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    pfam13907
    Location:1483 → 1572
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:1110 → 1197
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
Nucleotide Protein
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