U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

sec16a SEC16 homolog A, endoplasmic reticulum export factor [ Gadus morhua (Atlantic cod) ]

Gene ID: 115531909, updated on 17-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
sec16a
Gene description
SEC16 homolog A, endoplasmic reticulum export factor
See related
Ensembl:ENSGMOG00000016912
Gene type
protein coding
RefSeq status
MODEL
Organism
Gadus morhua
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See sec16a in Genome Data Viewer
Location:
chromosome: 19
Exon count:
34
Annotation release Status Assembly Chr Location
100 current gadMor3.0 (GCF_902167405.1) 19 NC_044066.1 (2102548..2127953, complement)

Chromosome 19 - NC_044066.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115531911 Neighboring gene ribosomal protein L28 Neighboring gene notch receptor 1a Neighboring gene calmodulin regulated spectrin-associated protein 1a

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_044066.1 Chromosome 19 Reference gadMor3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in COPII vesicle coating IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ER to Golgi transport vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein transport protein Sec16A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference gadMor3.0 Primary Assembly

Genomic

  1. NC_044066.1 Reference gadMor3.0 Primary Assembly

    Range
    2102548..2127953 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030341252.1 → XP_030197112.1  protein transport protein Sec16A isoform X5

    Conserved Domains (3) summary
    cd09233
    Location:1284 → 1645
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    PHA03247
    Location:1687 → 1997
    PHA03247; large tegument protein UL36; Provisional
    PRK14965
    Location:783 → 838
    PRK14965; DNA polymerase III subunits gamma and tau; Provisional

  2. XM_030341251.1 → XP_030197111.1  protein transport protein Sec16A isoform X4

    Conserved Domains (5) summary
    cd09233
    Location:1471 → 1832
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    PHA03247
    Location:4 → 446
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:1865 → 2033
    PRK10263; DNA translocase FtsK; Provisional
    PRK14965
    Location:970 → 1025
    PRK14965; DNA polymerase III subunits gamma and tau; Provisional
    pfam09770
    Location:1954 → 2150
    PAT1; Topoisomerase II-associated protein PAT1

  3. XM_030341250.1 → XP_030197110.1  protein transport protein Sec16A isoform X3

    Conserved Domains (3) summary
    cd09233
    Location:1471 → 1832
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    PHA03247
    Location:4 → 446
    PHA03247; large tegument protein UL36; Provisional
    PRK14965
    Location:970 → 1025
    PRK14965; DNA polymerase III subunits gamma and tau; Provisional

  4. XM_030341249.1 → XP_030197109.1  protein transport protein Sec16A isoform X2

    UniProtKB/TrEMBL
    A0A8C5B5G0
    Related
    ENSGMOP00000041189.1, ENSGMOT00000028248.1
    Conserved Domains (4) summary
    cd09233
    Location:1471 → 1832
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    PHA03247
    Location:4 → 446
    PHA03247; large tegument protein UL36; Provisional
    PRK14965
    Location:970 → 1025
    PRK14965; DNA polymerase III subunits gamma and tau; Provisional
    pfam09770
    Location:1945 → 2191
    PAT1; Topoisomerase II-associated protein PAT1

  5. XM_030341246.1 → XP_030197106.1  protein transport protein Sec16A isoform X1

    UniProtKB/TrEMBL
    A0A8C5CPW8
    Conserved Domains (3) summary
    cd09233
    Location:1471 → 1832
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    PHA03247
    Location:1874 → 2184
    PHA03247; large tegument protein UL36; Provisional
    PRK14965
    Location:970 → 1025
    PRK14965; DNA polymerase III subunits gamma and tau; Provisional

  6. XM_030341247.1 → XP_030197107.1  protein transport protein Sec16A isoform X1

    UniProtKB/TrEMBL
    A0A8C5CPW8
    Conserved Domains (3) summary
    cd09233
    Location:1471 → 1832
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    PHA03247
    Location:1874 → 2184
    PHA03247; large tegument protein UL36; Provisional
    PRK14965
    Location:970 → 1025
    PRK14965; DNA polymerase III subunits gamma and tau; Provisional

  7. XM_030341248.1 → XP_030197108.1  protein transport protein Sec16A isoform X1

    UniProtKB/TrEMBL
    A0A8C5CPW8
    Related
    ENSGMOP00000064342.1, ENSGMOT00000046284.1
    Conserved Domains (3) summary
    cd09233
    Location:1471 → 1832
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    PHA03247
    Location:1874 → 2184
    PHA03247; large tegument protein UL36; Provisional
    PRK14965
    Location:970 → 1025
    PRK14965; DNA polymerase III subunits gamma and tau; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.