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LOC115505218 cytokine SCM-1 beta [ Lynx canadensis (Canada lynx) ]

Gene ID: 115505218, updated on 13-Aug-2024

Summary

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Gene symbol
LOC115505218
Gene description
cytokine SCM-1 beta
See related
Ensembl:ENSLCNG00005022454
Gene type
protein coding
RefSeq status
MODEL
Organism
Lynx canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Lynx
Also known as
XCL2
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Genomic context

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See LOC115505218 in Genome Data Viewer
Location:
chromosome: F1
Exon count:
8
Annotation release Status Assembly Chr Location
102 current mLynCan4.pri.v2 (GCF_007474595.2) F1 NC_044319.2 (11022949..11100158)
101 previous assembly mLynCan4_v1.p (GCF_007474595.1) F1 NC_044319.1 (11022949..11100158)

Chromosome F1 - NC_044319.2Genomic Context describing neighboring genes Neighboring gene T-box transcription factor 19 Neighboring gene uncharacterized LOC115505459 Neighboring gene uncharacterized LOC115505006 Neighboring gene dermatopontin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables CCR chemokine receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chemokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to interleukin-1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to tumor necrosis factor IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to type II interferon IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lymphocyte chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monocyte chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neutrophil chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytokine SCM-1 beta; lymphotactin
Names
X-C motif chemokine ligand 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lynx canadensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLynCan4.pri.v2

Genomic

  1. NC_044319.2 Reference mLynCan4.pri.v2

    Range
    11022949..11100158
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030302664.1 → XP_030158524.1  lymphotactin isoform X1

    Conserved Domains (1) summary
    cd00271
    Location:79 → 148
    Chemokine_C; C or lymphotactin subgroup, 1 of 4 subgroup designations of chemokines based on the arrangement of two N-terminal, conserved cysteine residues. Most of the known chemokines (cd00169) belong to either the CC (cd00272) or CXC (cd00273) subclass. The two ...

  2. XM_030302667.1 → XP_030158527.1  lymphotactin isoform X3

    Conserved Domains (1) summary
    cd00271
    Location:52 → 121
    Chemokine_C; C or lymphotactin subgroup, 1 of 4 subgroup designations of chemokines based on the arrangement of two N-terminal, conserved cysteine residues. Most of the known chemokines (cd00169) belong to either the CC (cd00272) or CXC (cd00273) subclass. The two ...

  3. XM_030302666.1 → XP_030158526.1  lymphotactin isoform X3

    Conserved Domains (1) summary
    cd00271
    Location:52 → 121
    Chemokine_C; C or lymphotactin subgroup, 1 of 4 subgroup designations of chemokines based on the arrangement of two N-terminal, conserved cysteine residues. Most of the known chemokines (cd00169) belong to either the CC (cd00272) or CXC (cd00273) subclass. The two ...

  4. XM_030302670.1 → XP_030158530.1  cytokine SCM-1 beta isoform X4

    UniProtKB/TrEMBL
    A0A667IPE3
    Related
    ENSLCNP00005034557.1, ENSLCNT00005038552.1
    Conserved Domains (1) summary
    cd00271
    Location:22 → 91
    Chemokine_C; C or lymphotactin subgroup, 1 of 4 subgroup designations of chemokines based on the arrangement of two N-terminal, conserved cysteine residues. Most of the known chemokines (cd00169) belong to either the CC (cd00272) or CXC (cd00273) subclass. The two ...

  5. XM_030302665.1 → XP_030158525.1  lymphotactin isoform X2

    Conserved Domains (1) summary
    cd00271
    Location:77 → 146
    Chemokine_C; C or lymphotactin subgroup, 1 of 4 subgroup designations of chemokines based on the arrangement of two N-terminal, conserved cysteine residues. Most of the known chemokines (cd00169) belong to either the CC (cd00272) or CXC (cd00273) subclass. The two ...

  6. XM_030302668.1 → XP_030158528.1  cytokine SCM-1 beta isoform X4

    UniProtKB/TrEMBL
    A0A667IPE3
    Conserved Domains (1) summary
    cd00271
    Location:22 → 91
    Chemokine_C; C or lymphotactin subgroup, 1 of 4 subgroup designations of chemokines based on the arrangement of two N-terminal, conserved cysteine residues. Most of the known chemokines (cd00169) belong to either the CC (cd00272) or CXC (cd00273) subclass. The two ...
Nucleotide Protein
Heading Accession and Version

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