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CD177 CD177 molecule [ Lynx canadensis (Canada lynx) ]

Gene ID: 115502745, updated on 13-Aug-2024

Summary

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Gene symbol
CD177
Gene description
CD177 molecule
See related
Ensembl:ENSLCNG00005020539
Gene type
protein coding
RefSeq status
MODEL
Organism
Lynx canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Lynx
Orthologs
human all
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Genomic context

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See CD177 in Genome Data Viewer
Location:
chromosome: E2
Exon count:
17
Annotation release Status Assembly Chr Location
102 current mLynCan4.pri.v2 (GCF_007474595.2) E2 NC_044317.1 (48981603..49017135, complement)
101 previous assembly mLynCan4_v1.p (GCF_007474595.1) E2 NC_044317.1 (48981603..49017135, complement)

Chromosome E2 - NC_044317.1Genomic Context describing neighboring genes Neighboring gene DMRT like family C2 Neighboring gene carcinoembryonic antigen-related cell adhesion molecule 6-like Neighboring gene LY6/PLAUR domain containing 4 Neighboring gene testis expressed 101 Neighboring gene uncharacterized LOC116737790 Neighboring gene LY6/PLAUR domain containing 3 Neighboring gene pleckstrin homology like domain family B member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell-cell adhesion via plasma-membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction maintenance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leukocyte cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neutrophil degranulation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane raft IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CD177 antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lynx canadensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLynCan4.pri.v2

Genomic

  1. NC_044317.1 Reference mLynCan4.pri.v2

    Range
    48981603..49017135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030298420.2 → XP_030154280.1  CD177 antigen isoform X2

    UniProtKB/TrEMBL
    A0A667IZM6
    Conserved Domains (1) summary
    cl10471
    Location:377 → 446
    LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

  2. XM_030298418.1 → XP_030154278.1  CD177 antigen isoform X1

    UniProtKB/TrEMBL
    A0A667IZM6
    Conserved Domains (1) summary
    cl10471
    Location:401 → 470
    LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

  3. XM_032591350.1 → XP_032447241.1  CD177 antigen isoform X1

    UniProtKB/TrEMBL
    A0A667IZM6
    Conserved Domains (1) summary
    cl10471
    Location:401 → 470
    LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

  4. XM_030298421.2 → XP_030154281.1  CD177 antigen isoform X3

    UniProtKB/TrEMBL
    A0A667IZM6
    Conserved Domains (1) summary
    cl10471
    Location:361 → 430
    LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

  5. XM_030298423.1 → XP_030154283.1  CD177 antigen isoform X5

    UniProtKB/TrEMBL
    A0A667IZM6
    Related
    ENSLCNP00005031498.1, ENSLCNT00005035166.1
    Conserved Domains (1) summary
    cl10471
    Location:323 → 392
    LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

  6. XM_030298422.1 → XP_030154282.1  CD177 antigen isoform X4

    Conserved Domains (1) summary
    cl10471
    Location:211 → 281
    LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

  7. XM_030298424.1 → XP_030154284.1  CD177 antigen isoform X6

    Conserved Domains (1) summary
    cl10471
    Location:211 → 281
    LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...
Nucleotide Protein
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