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SMPD2 sphingomyelin phosphodiesterase 2 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 115498561, updated on 13-Aug-2024

Summary

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Gene symbol
SMPD2
Gene description
sphingomyelin phosphodiesterase 2
See related
Ensembl:ENSTGUG00000001713
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See SMPD2 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 26 NC_044238.2 (1487107..1491939)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 26 NC_045024.1 (1403663..1408381)

Chromosome 26 - NC_044238.2Genomic Context describing neighboring genes Neighboring gene TUB like protein 1 Neighboring gene TEA domain transcription factor 3 Neighboring gene uncharacterized LOC116809331 Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 1 Neighboring gene inositol 1,4,5-triphosphate receptor associated 2 Neighboring gene FA complementation group E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044238.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    1487107..1491939
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030291927.3 → XP_030147787.3  sphingomyelin phosphodiesterase 2 isoform X2

    Conserved Domains (1) summary
    cl00490
    Location:14 → 279
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  2. XM_030291926.3 → XP_030147786.3  sphingomyelin phosphodiesterase 2 isoform X1

    UniProtKB/TrEMBL
    A0A674GK77, H0YU02
    Conserved Domains (1) summary
    cl00490
    Location:105 → 370
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
Nucleotide Protein
Heading Accession and Version

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