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PLEC plectin [ Microcaecilia unicolor ]

Gene ID: 115481242, updated on 17-Mar-2024

Summary

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Gene symbol
PLEC
Gene description
plectin
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
Orthologs
human mouse all
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Genomic context

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See PLEC in Genome Data Viewer
Location:
chromosome: 1
Exon count:
34
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) 1 NC_044031.1 (621065144..621350880)

Chromosome 1 - NC_044031.1Genomic Context describing neighboring genes Neighboring gene alanine aminotransferase 2-like Neighboring gene uncharacterized LOC115460484 Neighboring gene uncharacterized LOC115481285 Neighboring gene microtubule-actin cross-linking factor 1-like Neighboring gene microtubule-actin cross-linking factor 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044031.1 Chromosome 1 Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables keratin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intermediate filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NC_044031.1 Reference aMicUni1.1 Primary Assembly

    Range
    621065144..621350880
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030220355.1 → XP_030076215.1  LOW QUALITY PROTEIN: plectin

    UniProtKB/TrEMBL
    A0A6P7ZRU8
    Conserved Domains (9) summary
    PTZ00121
    Location:1935 → 2724
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4862 → 4898
    PLEC; Plectin repeat
    COG0419
    Location:1613 → 2165
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:628 → 850
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1205 → 1394
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4631 → 4671
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam17902
    Location:1380 → 1446
    SH3_10; SH3 domain
    pfam18373
    Location:1481 → 1558
    Spectrin_like; Spectrin like domain
Nucleotide Protein
Heading Accession and Version

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