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EXT1 exostosin glycosyltransferase 1 [ Microcaecilia unicolor ]

Gene ID: 115479964, updated on 17-Mar-2024

Summary

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Gene symbol
EXT1
Gene description
exostosin glycosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
Orthologs
human mouse all
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Genomic context

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See EXT1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) 1 NC_044031.1 (572139626..572672912, complement)

Chromosome 1 - NC_044031.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 30 member 8 Neighboring gene mediator complex subunit 30 Neighboring gene uncharacterized LOC115479970 Neighboring gene uncharacterized LOC115479984 Neighboring gene sterile alpha motif domain containing 12 Neighboring gene uncharacterized LOC115479989

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044031.1 Chromosome 1 Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NC_044031.1 Reference aMicUni1.1 Primary Assembly

    Range
    572139626..572672912 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030218322.1 → XP_030074182.1  exostosin-1

    UniProtKB/TrEMBL
    A0A6P7Z4D3
    Conserved Domains (2) summary
    pfam03016
    Location:108 → 394
    Exostosin; Exostosin family
    pfam09258
    Location:478 → 723
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
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Gene LinkOut

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