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SMPD4 sphingomyelin phosphodiesterase 4 [ Microcaecilia unicolor ]

Gene ID: 115479729, updated on 17-Mar-2024

Summary

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Gene symbol
SMPD4
Gene description
sphingomyelin phosphodiesterase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
24
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) 11 NC_044041.1 (60451845..60551513, complement)

Chromosome 11 - NC_044041.1Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 15 Neighboring gene uncharacterized LOC115480382 Neighboring gene coiled-coil domain-containing protein 74A-like Neighboring gene gamma-glutamyltransferase 5 Neighboring gene glutathione hydrolase 5 proenzyme-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044041.1 Chromosome 11 Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase D activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NC_044041.1 Reference aMicUni1.1 Primary Assembly

    Range
    60451845..60551513 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030217877.1 → XP_030073737.1  sphingomyelin phosphodiesterase 4 isoform X1

    UniProtKB/TrEMBL
    A0A6P7Z342
    Conserved Domains (1) summary
    pfam14724
    Location:77 → 836
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  2. XM_030217878.1 → XP_030073738.1  sphingomyelin phosphodiesterase 4 isoform X2

    UniProtKB/TrEMBL
    A0A6P7Z8A1
    Conserved Domains (1) summary
    pfam14724
    Location:77 → 806
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  3. XM_030217882.1 → XP_030073742.1  sphingomyelin phosphodiesterase 4 isoform X3

    UniProtKB/TrEMBL
    A0A6P7ZDT1
    Conserved Domains (1) summary
    pfam14724
    Location:8 → 773
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  4. XM_030217883.1 → XP_030073743.1  sphingomyelin phosphodiesterase 4 isoform X3

    UniProtKB/TrEMBL
    A0A6P7ZDT1
    Conserved Domains (1) summary
    pfam14724
    Location:8 → 773
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  5. XM_030217879.1 → XP_030073739.1  sphingomyelin phosphodiesterase 4 isoform X3

    UniProtKB/TrEMBL
    A0A6P7ZDT1
    Conserved Domains (1) summary
    pfam14724
    Location:8 → 773
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  6. XM_030217884.1 → XP_030073744.1  sphingomyelin phosphodiesterase 4 isoform X3

    UniProtKB/TrEMBL
    A0A6P7ZDT1
    Conserved Domains (1) summary
    pfam14724
    Location:8 → 773
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  7. XM_030217881.1 → XP_030073741.1  sphingomyelin phosphodiesterase 4 isoform X3

    UniProtKB/TrEMBL
    A0A6P7ZDT1
    Conserved Domains (1) summary
    pfam14724
    Location:8 → 773
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  8. XM_030217880.1 → XP_030073740.1  sphingomyelin phosphodiesterase 4 isoform X3

    UniProtKB/TrEMBL
    A0A6P7ZDT1
    Conserved Domains (1) summary
    pfam14724
    Location:8 → 773
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  9. XM_030217886.1 → XP_030073746.1  sphingomyelin phosphodiesterase 4 isoform X4

    UniProtKB/TrEMBL
    A0A6P7ZB16
    Conserved Domains (1) summary
    pfam14724
    Location:8 → 743
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
Nucleotide Protein
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