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DGCR2 DiGeorge syndrome critical region gene 2 [ Microcaecilia unicolor ]

Gene ID: 115479505, updated on 17-Mar-2024

Summary

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Gene symbol
DGCR2
Gene description
DiGeorge syndrome critical region gene 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
Orthologs
human mouse all
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Genomic context

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See DGCR2 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
11
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) 11 NC_044041.1 (58545321..58648317)

Chromosome 11 - NC_044041.1Genomic Context describing neighboring genes Neighboring gene ess-2 splicing factor homolog Neighboring gene testis specific serine kinase 2 Neighboring gene carbonic anhydrase 15-like Neighboring gene immunoglobulin lambda variable 5-39-like Neighboring gene immunoglobulin lambda variable 5-37-like Neighboring gene uncharacterized LOC115480425

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044041.1 Chromosome 11 Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integral membrane protein DGCR2/IDD

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NC_044041.1 Reference aMicUni1.1 Primary Assembly

    Range
    58545321..58648317
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030217445.1 → XP_030073305.1  integral membrane protein DGCR2/IDD isoform X1

    UniProtKB/TrEMBL
    A0A6P7ZD37
    Conserved Domains (4) summary
    smart00214
    Location:303 → 341
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:41 → 77
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam04554
    Location:436 → 463
    Extensin_2; Extensin-like region
    cl02432
    Location:127 → 279
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_030217446.1 → XP_030073306.1  integral membrane protein DGCR2/IDD isoform X2

    UniProtKB/TrEMBL
    A0A6P7Z9Q0
    Conserved Domains (4) summary
    smart00214
    Location:299 → 337
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:41 → 77
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam04554
    Location:432 → 459
    Extensin_2; Extensin-like region
    cl02432
    Location:123 → 275
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  3. XM_030217447.1 → XP_030073307.1  integral membrane protein DGCR2/IDD isoform X3

    UniProtKB/TrEMBL
    A0A6P7Z1T1
    Conserved Domains (4) summary
    smart00214
    Location:292 → 330
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:30 → 66
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam04554
    Location:425 → 452
    Extensin_2; Extensin-like region
    cl02432
    Location:116 → 268
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
Heading Accession and Version

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