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PSMD1 proteasome 26S subunit, non-ATPase 1 [ Microcaecilia unicolor ]

Gene ID: 115478450, updated on 17-Mar-2024

Summary

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Gene symbol
PSMD1
Gene description
proteasome 26S subunit, non-ATPase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
Orthologs
human mouse all
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Genomic context

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See PSMD1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
25
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) 10 NC_044040.1 (218022921..218211571, complement)

Chromosome 10 - NC_044040.1Genomic Context describing neighboring genes Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 Neighboring gene armadillo repeat containing 9 Neighboring gene 5-hydroxytryptamine receptor 2B Neighboring gene chromosome 10 C2orf72 homolog Neighboring gene ribosomal protein L35a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044040.1 Chromosome 10 Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables enzyme regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome regulatory particle, base subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in proteasome storage granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
26S proteasome non-ATPase regulatory subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NC_044040.1 Reference aMicUni1.1 Primary Assembly

    Range
    218022921..218211571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030215782.1 → XP_030071642.1  26S proteasome non-ATPase regulatory subunit 1

    UniProtKB/TrEMBL
    A0A6P7YX02
    Conserved Domains (2) summary
    COG5116
    Location:2 → 938
    RPN2; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
    sd00044
    Location:603 → 626
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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