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TCEA2 transcription elongation factor A2 [ Microcaecilia unicolor ]

Gene ID: 115476910, updated on 17-Mar-2024

Summary

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Gene symbol
TCEA2
Gene description
transcription elongation factor A2
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
Orthologs
human mouse all
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Genomic context

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See TCEA2 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) 8 NC_044038.1 (196688601..196771982)

Chromosome 8 - NC_044038.1Genomic Context describing neighboring genes Neighboring gene SRY-box transcription factor 18 Neighboring gene uncharacterized LOC115476911 Neighboring gene regulator of G protein signaling 19 Neighboring gene LKAAEAR motif containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044038.1 Chromosome 8 Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription elongation factor A protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NC_044038.1 Reference aMicUni1.1 Primary Assembly

    Range
    196688601..196771982
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030213488.1 → XP_030069348.1  transcription elongation factor A protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A6P7YWL5
    Conserved Domains (1) summary
    TIGR01385
    Location:5 → 270
    TFSII; transcription elongation factor S-II

  2. XM_030213487.1 → XP_030069347.1  transcription elongation factor A protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A6P7YQ21
    Conserved Domains (1) summary
    TIGR01385
    Location:5 → 291
    TFSII; transcription elongation factor S-II

  3. XM_030213490.1 → XP_030069350.1  transcription elongation factor A protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A6P7Z0R9
    Conserved Domains (1) summary
    TIGR01385
    Location:1 → 265
    TFSII; transcription elongation factor S-II

  4. XM_030213489.1 → XP_030069349.1  transcription elongation factor A protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A6P7Z0R9
    Conserved Domains (1) summary
    TIGR01385
    Location:1 → 265
    TFSII; transcription elongation factor S-II
Nucleotide Protein
Heading Accession and Version

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