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XYLT2 xylosyltransferase 2 [ Microcaecilia unicolor ]

Gene ID: 115473404, updated on 17-Mar-2024

Summary

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Gene symbol
XYLT2
Gene description
xylosyltransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
Orthologs
human mouse all
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Genomic context

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See XYLT2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) 6 NC_044036.1 (320038760..320094349)

Chromosome 6 - NC_044036.1Genomic Context describing neighboring genes Neighboring gene RAB37, member RAS oncogene family Neighboring gene HEAT repeat containing 9 Neighboring gene uncharacterized LOC115473407 Neighboring gene mitochondrial ribosomal protein L27

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044036.1 Chromosome 6 Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NC_044036.1 Reference aMicUni1.1 Primary Assembly

    Range
    320038760..320094349
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030208340.1 → XP_030064200.1  xylosyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A6P7YM40
    Conserved Domains (2) summary
    pfam12529
    Location:488 → 667
    Xylo_C; Xylosyltransferase C terminal
    cl27418
    Location:230 → 455
    Branch; Core-2/I-Branching enzyme

  2. XM_030208339.1 → XP_030064199.1  xylosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A6P7YMB3
    Conserved Domains (2) summary
    pfam02485
    Location:230 → 482
    Branch; Core-2/I-Branching enzyme
    pfam12529
    Location:515 → 694
    Xylo_C; Xylosyltransferase C terminal
Nucleotide Protein
Heading Accession and Version

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