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DDX31 DEAD-box helicase 31 [ Microcaecilia unicolor ]

Gene ID: 115473108, updated on 17-Mar-2024

Summary

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Gene symbol
DDX31
Gene description
DEAD-box helicase 31
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
Orthologs
human mouse all
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Genomic context

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See DDX31 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
23
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) 6 NC_044036.1 (288070787..288158925)

Chromosome 6 - NC_044036.1Genomic Context describing neighboring genes Neighboring gene adenylate kinase 8 Neighboring gene general transcription factor IIIC subunit 4 Neighboring gene BarH like homeobox 1 Neighboring gene cilia and flagella associated protein 77

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044036.1 Chromosome 6 Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX31

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NC_044036.1 Reference aMicUni1.1 Primary Assembly

    Range
    288070787..288158925
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030207772.1 → XP_030063632.1  probable ATP-dependent RNA helicase DDX31 isoform X1

    UniProtKB/TrEMBL
    A0A6P7YFC9
    Conserved Domains (2) summary
    COG0513
    Location:142 → 635
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17949
    Location:151 → 354
    DEADc_DDX31; DEAD-box helicase domain of DEAD box protein 31

  2. XM_030207771.1 → XP_030063631.1  probable ATP-dependent RNA helicase DDX31 isoform X1

    UniProtKB/TrEMBL
    A0A6P7YFC9
    Conserved Domains (2) summary
    COG0513
    Location:142 → 635
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17949
    Location:151 → 354
    DEADc_DDX31; DEAD-box helicase domain of DEAD box protein 31

  3. XM_030207773.1 → XP_030063633.1  probable ATP-dependent RNA helicase DDX31 isoform X2

    UniProtKB/TrEMBL
    A0A6P7YF17
    Conserved Domains (2) summary
    COG0513
    Location:142 → 561
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17949
    Location:151 → 354
    DEADc_DDX31; DEAD-box helicase domain of DEAD box protein 31
Nucleotide Protein
Heading Accession and Version

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