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SUMF1 sulfatase modifying factor 1 [ Microcaecilia unicolor ]

Gene ID: 115471905, updated on 17-Mar-2024

Summary

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Gene symbol
SUMF1
Gene description
sulfatase modifying factor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
Orthologs
human mouse all
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Genomic context

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See SUMF1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) 6 NC_044036.1 (129996429..130045626, complement)

Chromosome 6 - NC_044036.1Genomic Context describing neighboring genes Neighboring gene tRNA nucleotidyl transferase 1 Neighboring gene cereblon Neighboring gene leucine rich repeat neuronal 1 Neighboring gene inositol 1,4,5-trisphosphate receptor type 1 Neighboring gene basic helix-loop-helix family member e40

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044036.1 Chromosome 6 Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
formylglycine-generating enzyme

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NC_044036.1 Reference aMicUni1.1 Primary Assembly

    Range
    129996429..130045626 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030205829.1 → XP_030061689.1  formylglycine-generating enzyme isoform X3

    UniProtKB/TrEMBL
    A0A6P7YFQ6
    Conserved Domains (1) summary
    pfam03781
    Location:92 → 292
    FGE-sulfatase; Sulfatase-modifying factor enzyme 1

  2. XM_030205828.1 → XP_030061688.1  formylglycine-generating enzyme isoform X2

    UniProtKB/TrEMBL
    A0A6P7Y9K4
    Conserved Domains (1) summary
    pfam03781
    Location:74 → 312
    FGE-sulfatase; Sulfatase-modifying factor enzyme 1

  3. XM_030205827.1 → XP_030061687.1  formylglycine-generating enzyme isoform X1

    UniProtKB/TrEMBL
    A0A6P7Y2F3
    Conserved Domains (1) summary
    pfam03781
    Location:74 → 350
    FGE-sulfatase; Sulfatase-modifying factor enzyme 1

RNA

  1. XR_003942444.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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