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LOC115471822 torsin-1A-interacting protein 1-like [ Microcaecilia unicolor ]

Gene ID: 115471822, updated on 23-Oct-2023

Summary

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Gene symbol
LOC115471822
Gene description
torsin-1A-interacting protein 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
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Genomic context

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See LOC115471822 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) 6 NC_044036.1 (97780957..97890958, complement)

Chromosome 6 - NC_044036.1Genomic Context describing neighboring genes Neighboring gene quiescin sulfhydryl oxidase 1 Neighboring gene centrosomal protein 350 Neighboring gene protein TsetseEP-like Neighboring gene torsin-1A-interacting protein 2-like Neighboring gene ADAMTS-like protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044036.1 Chromosome 6 Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NC_044036.1 Reference aMicUni1.1 Primary Assembly

    Range
    97780957..97890958 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030205671.1 → XP_030061531.1  torsin-1A-interacting protein 1-like isoform X7

    UniProtKB/TrEMBL
    A0A6P7Y9A8
    Conserved Domains (1) summary
    pfam05609
    Location:143 → 521
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_030205670.1 → XP_030061530.1  torsin-1A-interacting protein 1-like isoform X6

    UniProtKB/TrEMBL
    A0A6P7YEL7
    Conserved Domains (1) summary
    pfam05609
    Location:144 → 522
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  3. XM_030205668.1 → XP_030061528.1  torsin-1A-interacting protein 1-like isoform X5

    UniProtKB/TrEMBL
    A0A6P7Y936
    Conserved Domains (1) summary
    pfam05609
    Location:86 → 529
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  4. XM_030205665.1 → XP_030061525.1  torsin-1A-interacting protein 1-like isoform X2

    UniProtKB/TrEMBL
    A0A6P7YEL2
    Conserved Domains (1) summary
    pfam05609
    Location:164 → 542
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  5. XM_030205667.1 → XP_030061527.1  torsin-1A-interacting protein 1-like isoform X4

    UniProtKB/TrEMBL
    A0A6P7Y206
    Conserved Domains (1) summary
    pfam05609
    Location:86 → 530
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  6. XM_030205666.1 → XP_030061526.1  torsin-1A-interacting protein 1-like isoform X3

    UniProtKB/TrEMBL
    A0A6P7Y9A5
    Conserved Domains (1) summary
    pfam05609
    Location:164 → 542
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  7. XM_030205664.1 → XP_030061524.1  torsin-1A-interacting protein 1-like isoform X1

    UniProtKB/TrEMBL
    A0A6P7YFA6
    Conserved Domains (1) summary
    pfam05609
    Location:165 → 543
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
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