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LRTM1 leucine rich repeats and transmembrane domains 1 [ Microcaecilia unicolor ]

Gene ID: 115471721, updated on 17-Mar-2024

Summary

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Gene symbol
LRTM1
Gene description
leucine rich repeats and transmembrane domains 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
Orthologs
human mouse all
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Genomic context

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See LRTM1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) 6 NC_044036.1 (160058641..160071778)

Chromosome 6 - NC_044036.1Genomic Context describing neighboring genes Neighboring gene Wnt family member 5A Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 3 Neighboring gene uncharacterized LOC115471723 Neighboring gene selenoprotein K Neighboring gene actin related protein 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044036.1 Chromosome 6 Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat and transmembrane domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NC_044036.1 Reference aMicUni1.1 Primary Assembly

    Range
    160058641..160071778
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030205517.1 → XP_030061377.1  leucine-rich repeat and transmembrane domain-containing protein 1

    UniProtKB/TrEMBL
    A0A6P7Y1G5
    Conserved Domains (4) summary
    smart00013
    Location:20 → 52
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:76 → 213
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:76 → 99
    LRR_1; leucine-rich repeat [structural motif]
    pfam13855
    Location:76 → 134
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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