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SMPD3 sphingomyelin phosphodiesterase 3 [ Microcaecilia unicolor ]

Gene ID: 115471426, updated on 17-Mar-2024

Summary

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Gene symbol
SMPD3
Gene description
sphingomyelin phosphodiesterase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
Orthologs
human mouse all
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Genomic context

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See SMPD3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) 5 NC_044035.1 (295107609..295177522)

Chromosome 5 - NC_044035.1Genomic Context describing neighboring genes Neighboring gene phospholipase A2, minor isoenzyme-like Neighboring gene uncharacterized LOC115471351 Neighboring gene uncharacterized LOC115470775 Neighboring gene protein arginine methyltransferase 7 Neighboring gene solute carrier family 7 member 6 opposite strand

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044035.1 Chromosome 5 Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NC_044035.1 Reference aMicUni1.1 Primary Assembly

    Range
    295107609..295177522
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030205139.1 → XP_030060999.1  sphingomyelin phosphodiesterase 3

    UniProtKB/TrEMBL
    A0A6P7YDW1
    Conserved Domains (1) summary
    cd09078
    Location:343 → 651
    nSMase; Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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