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ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 [ Microcaecilia unicolor ]

Gene ID: 115470672, updated on 17-Mar-2024

Summary

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Gene symbol
ST3GAL6
Gene description
ST3 beta-galactoside alpha-2,3-sialyltransferase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
Orthologs
human mouse all
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Genomic context

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See ST3GAL6 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
16
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) 5 NC_044035.1 (259430093..259606743)

Chromosome 5 - NC_044035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115471401 Neighboring gene uncharacterized LOC115471402 Neighboring gene collagen type VIII alpha 1 chain Neighboring gene uncharacterized LOC115469909

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044035.1 Chromosome 5 Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactoside alpha-2,3-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
type 2 lactosamine alpha-2,3-sialyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NC_044035.1 Reference aMicUni1.1 Primary Assembly

    Range
    259430093..259606743
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030204041.1 → XP_030059901.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A6P7Y493
    Conserved Domains (1) summary
    pfam00777
    Location:108 → 365
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_030204040.1 → XP_030059900.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A6P7Y493
    Conserved Domains (1) summary
    pfam00777
    Location:108 → 365
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_030204042.1 → XP_030059902.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A6P7XWU4
    Conserved Domains (1) summary
    pfam00777
    Location:71 → 328
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  4. XM_030204039.1 → XP_030059899.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A6P7YAM0
    Conserved Domains (1) summary
    pfam00777
    Location:130 → 387
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  5. XM_030204043.1 → XP_030059903.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X4

    UniProtKB/TrEMBL
    A0A6P7Y4S3
    Conserved Domains (1) summary
    pfam00777
    Location:130 → 296
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  6. XM_030204045.1 → XP_030059905.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X5

    UniProtKB/TrEMBL
    A0A6P7Y9Z1
    Conserved Domains (1) summary
    pfam00777
    Location:47 → 304
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  7. XM_030204044.1 → XP_030059904.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X5

    UniProtKB/TrEMBL
    A0A6P7Y9Z1
    Conserved Domains (1) summary
    pfam00777
    Location:47 → 304
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
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