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ACOD1 aconitate decarboxylase 1 [ Microcaecilia unicolor ]

Gene ID: 115468687, updated on 17-Mar-2024

Summary

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Gene symbol
ACOD1
Gene description
aconitate decarboxylase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
Orthologs
human mouse all
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Genomic context

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See ACOD1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) 4 NC_044034.1 (121132530..121179376)

Chromosome 4 - NC_044034.1Genomic Context describing neighboring genes Neighboring gene F-box and leucine rich repeat protein 3 Neighboring gene CLN5 intracellular trafficking protein Neighboring gene potassium channel tetramerization domain containing 12 Neighboring gene LIM domain 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044034.1 Chromosome 4 Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cis-aconitate decarboxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NC_044034.1 Reference aMicUni1.1 Primary Assembly

    Range
    121132530..121179376
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030200593.1 → XP_030056453.1  cis-aconitate decarboxylase isoform X2

    UniProtKB/TrEMBL
    A0A6P7XVB6
    Conserved Domains (1) summary
    pfam03972
    Location:1 → 404
    MmgE_PrpD; MmgE/PrpD family

  2. XM_030200592.1 → XP_030056452.1  cis-aconitate decarboxylase isoform X1

    UniProtKB/TrEMBL
    A0A6P7XM82
    Conserved Domains (1) summary
    pfam03972
    Location:10 → 436
    MmgE_PrpD; MmgE/PrpD family
Nucleotide Protein
Heading Accession and Version

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